| getSearchModification | 0% |
| getSearchType | 0% |
| getSearchDatabaseRef | 0% |
| getSearchDatabase | 0% |
| getRole | 0% |
| getSample | 0% |
| getSeq | 0% |
| getSequenceCollection | 0% |
| getSoftwareName | 0% |
| getSourceFile | 0% |
| getSiteRegexp | 0% |
| getSequenceCollectionProteins | 0% |
| getSequenceCollectionPeptides | 0% |
| getResidue | 0% |
| getProvider | 0% |
| getPeptideEvidenceRef | 0% |
| getPeptideHypothesis | 0% |
| getPeptideEvidence | 0% |
| getPeptide | 0% |
| getParentTolerance | 0% |
| getPeptideSequence | 0% |
| getPerson | 0% |
| getProteinDetectionList | 0% |
| getProteinDetectionProtocol | 0% |
| getProteinDetectionHypothesis | 0% |
| getProteinDetection | 0% |
| getProteinAmbiguityGroup | 0% |
| getSpecifityRules | 0% |
| getSpectraData | 0% |
| setRankFilter | 0% |
| getReader | 0% |
| isFilterMatch | 0% |
| getProteinEntryType | 0% |
| getCvList | 0% |
| parseInfo | 0% |
| getDatasetFileList | 0% |
| getUserParam | 0% |
| getAttributeId | 0% |
| getCvParam | 0% |
| getCvParamName | 0% |
| getIdString | 0% |
| getCv | 0% |
| getTranslationTable | 0% |
| parsePeptideEvidenceCv | 0% |
| getSpectrumIdentificationItemRef | 0% |
| getSpectrumIdentificationItem | 0% |
| getSpectrumIdentification | 0% |
| getSpectrumIdFormat | 0% |
| getSpectrumIdentificationList | 0% |
| getSpectrumIdentificationProtocol | 0% |
| getThreshold | 0% |
| getTolerance | 0% |
| getSubstitutionModification | 0% |
| getSubSample | 0% |
| getSpectrumIdentificationResult | 0% |
| getParent | 0% |
| getOrganization | 0% |
| getAnalysisProtocolCollection | 0% |
| getAnalysisSampleCollection | 0% |
| getAnalysisParams | 0% |
| getAnalysisData | 0% |
| getAnalysisCollection | 0% |
| getAnalysisSoftwareList | 0% |
| getAnalysisSoftware | 0% |
| parseIdentifier | 0% |
| getDbSequence | 0% |
| getContactRole | 0% |
| getBibliographicReference | 0% |
| getAuditCollection | 0% |
| getAmigiousResidue | 0% |
| getAffiliation | 0% |
| getParser | 0% |
| parseIdentifier | 0% |
| getProtein | 0% |
| parseIdentifier | 0% |
| getProtein | 0% |
| getProtein | 0% |
| parseAttributes | 0% |
| getAdditionalSearchParams | 0% |
| __construct | 0% |
| parseIdentifier | 0% |
| parseModifications | 0% |
| parseDbSequenceParam | 0% |
| getCustomisations | 0% |
| getInputSpectra | 0% |
| getInputSpectrumIdentifications | 0% |
| getInclude | 0% |
| getFragmentationTable | 0% |
| getDataCollection | 0% |
| getInputs | 0% |
| getIonType | 0% |
| getModificationParams | 0% |
| getModification | 0% |
| getMeasure | 0% |
| getMassTable | 0% |
| getFragmentTolerance | 0% |
| getFragmentation | 0% |
| getEnzymeName | 0% |
| getEnzymes | 0% |
| getExclude | 0% |
| getEnzyme | 0% |
| getDatabaseTranslation | 0% |
| getDatabaseFilters | 0% |
| getDatabaseName | 0% |
| getFragmentArray | 0% |
| getExternalFormatDocumentation | 0% |
| getFilter | 0% |
| getFileFormat | 0% |
| getFilterType | 0% |
| getProtein | 76% |
| parseSequence | 81% |
| next | 85% |
| __construct | 87% |
| parseMeta | 88% |