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| <?php | |
| /** | |
| * Copyright 2016 University of Liverpool | |
| * | |
| * Licensed under the Apache License, Version 2.0 (the "License"); | |
| * you may not use this file except in compliance with the License. | |
| * You may obtain a copy of the License at | |
| * | |
| * http://www.apache.org/licenses/LICENSE-2.0 | |
| * | |
| * Unless required by applicable law or agreed to in writing, software | |
| * distributed under the License is distributed on an "AS IS" BASIS, | |
| * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | |
| * See the License for the specific language governing permissions and | |
| * limitations under the License. | |
| */ | |
| namespace pgb_liv\php_ms\Reader\FastaEntry; | |
| /** | |
| * Factory method attempts to find the correct parser for known FASTA entry headers | |
| * | |
| * @author Andrew Collins | |
| */ | |
| class FastaEntryFactory | |
| { | |
| private static $classes = array( | |
| '\pgb_liv\php_ms\Reader\FastaEntry\UniProtFastaEntry', | |
| '\pgb_liv\php_ms\Reader\FastaEntry\EnsembleFastaEntry', | |
| '\pgb_liv\php_ms\Reader\FastaEntry\PeffFastaEntry' | |
| ); | |
| private static $defaultClass = 'pgb_liv\php_ms\Reader\FastaEntry\DefaultFastaEntry'; | |
| public static function getParser($identifier) | |
| { | |
| foreach (self::$classes as $class) { | |
| try { | |
| $identifier = $class::parseIdentifier($identifier); | |
| return new $class(); | |
| } catch (\Exception $e) { | |
| // Empty - try next parser | |
| } | |
| } | |
| return new self::$defaultClass(); | |
| } | |
| } |