pgb_liv\php_ms\Core\ChargedMassTrait
Trait for providing access to setter/getter of monoisotopic and average mass-to-charge values.
Does not store an mass-to-charge ratio but calculates on demand from neutral mass and charge values.
- Author: Andrew Collins
Synopsis
trait ChargedMassTrait
{
- // members
- private $charge;
- // methods
- public void setMonoisotopicMassCharge()
- public void setAverageMassCharge()
- public float getMonoisotopicMassCharge()
- public float getAverageMassCharge()
- public void setCharge()
- public int getCharge()
- public static float getMassCharge()
- public static float getNeutralMass()
- // Inherited methods from MassTrait
- public void setMonoisotopicMass()
- public float getMonoisotopicMass()
- public void setAverageMass()
- public float getAverageMass()
Hierarchy
Uses
Used by
Coverage
| Methods | 0% | 0 / 8 |
| Lines | 0% | / |
Violations
Checkstyle
| Line | Column | Severity | Message |
|---|---|---|---|
| 145 | 1 | error | Multi-line function call not indented correctly; expected 12 spaces but found 16 |
| 145 | 93 | error | Closing parenthesis of a multi-line function call must be on a line by itself |
Members
private
- $charge
—
int
The charge value for this instance
Methods
public
- getAverageMassCharge() — Gets the average mass-to-charge ratio for this ion
- getCharge() — Gets the charge value associated with this instance
- getMassCharge() — Gets the mass-to-charge value for the specified mass and charge
- getMonoisotopicMassCharge() — Gets the monoisotopic mass-to-charge ratio for this instance
- getNeutralMass() — gets the neutral mass for the specified mass-to-charge ratio and charge
- setAverageMassCharge() — Sets the average mass-to-charge ratio for this instance
- setCharge() — Sets the charge of this instance
- setMonoisotopicMassCharge() — Sets the monoisotopic mass-to-charge ratio for this instance.
Inherited from pgb_liv\php_ms\Core\MassTrait
public
- getAverageMass() — Gets the average mass of this object
- getMonoisotopicMass() — Gets the monoisotopic mass of this object
- setAverageMass() — Sets the average mass for this object
- setMonoisotopicMass() — Sets the monoisotopic mass for this object
History
-
2018-11-09T12:42:52+00:00 (commit #52185c5)
Author: Andrew Collins (detritus@blueyonder.co.uk) / Commiter: Andrew Collins (detritus@blueyonder.co.uk)
Fixed division by zero error if a m/z is already a neutral mass
-
2018-07-06T11:22:28+01:00 (commit #b130554)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added "U" to composition reference table Added support for Selenium in peptide composition
-
2018-06-25T13:27:30+01:00 (commit #41c132a)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added ChargedMassTrait to provide consistent support for mz values. Note breaking charges to setMassCharge