pgb_liv\php_ms\Utility\Digest\DigestInterface
Generic interface for all digestion algorithms
- Author: Andrew Collins
Synopsis
interface DigestInterface
{
- // methods
- public array digest()
- public string getName()
- public void setMaxMissedCleavage()
- public int getMaxMissedCleavage()
- public void setNmeEnabled()
- public boolean isNmeEnabled()
Methods
public
- digest() — Digest the protein and produce peptides matching the enzyme rules.
- getMaxMissedCleavage() — Gets the maximum missed cleavage count value
- getName() — Returns the name of this enzyme
- isNmeEnabled() — Tells whether n-terminal methionine excision will be performed or not.
- setMaxMissedCleavage() — Set the maximum number of missed cleavages the algorithm should produce.
- setNmeEnabled() — Sets whether n-terminal methionine excision should be performed.