pgb_liv\php_ms\Utility\Fragment\AbstractFragment::__construct

Creates a new instance of this fragmenter using the specified peptide

Signature

public function __construct(ModifiableSequenceInterface $sequence )

Parameters

$sequence — pgb_liv\php_ms\Core\ModifiableSequenceInterface


Peptide object which must contain a sequence

Errors/Exceptions

InvalidArgumentException

If the peptide object does not contain a sequence

Test Coverage

Information

• Coverage: 4/4 Lines (100%)
• Tests: 10
• Passed: 10 (100%)

Tests

• [ PASSED ] — pgb_liv\php_ms\Test\Unit\FragmentTest::testObjectCanBeConstructedForValidConstructorArguments
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\FragmentTest::testObjectCanBeConstructedForInvalidConstructorArguments
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\FragmentTest::testObjectCanGetIonsA
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\FragmentTest::testObjectCanGetIonsB
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\FragmentTest::testObjectCanGetIonsC
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\FragmentTest::testObjectCanGetIonsX
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\FragmentTest::testObjectCanGetIonsY
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\FragmentTest::testObjectCanGetIonsZ
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\FragmentTest::testObjectCanGetModifiedIonsB
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\FragmentTest::testObjectCanGetModifiedIonsY