pgb_liv\php_ms\Utility\Digest\DigestRegularExpression::performDigestion

Digest the protein and produce peptides matching the enzyme rules.

Signature

protected function performDigestion(Protein $protein )

Parameters

$protein — pgb_liv\php_ms\Core\Protein


Must contain a protein sequence

Parent Implementation

• AbstractDigest

Test Coverage

Information

• Coverage: 31/32 Lines (96.875%)
• Tests: 7
• Passed: 7 (100%)

Tests

• [ PASSED ] — pgb_liv\php_ms\Test\Unit\DigestTrypsinTest::testCanValidateEntryK
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\DigestTrypsinTest::testCanValidateEntryR
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\DigestTrypsinTest::testCanValidateEntryKR
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\DigestTrypsinTest::testCanValidateEntryKP
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\DigestTrypsinTest::testCanValidateEntryRP
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\DigestTrypsinTest::testCanValidateEntryMissCleave
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\DigestTrypsinTest::testCanValidateSiteAtEnd

Violations

Checkstyle

Line	Column	Severity	Message
95	27	error	Opening parenthesis of a multi-line function call must be the last content on the line
95	67	error	Only one argument is allowed per line in a multi-line function call
96	1	error	Multi-line function call not indented correctly; expected 16 spaces but found 20
96	80	error	Closing parenthesis of a multi-line function call must be on a line by itself