pgb_liv\php_ms\Utility\Digest\DigestFactory
Factory class for digestion algorithms.
- Author: Andrew Collins
Synopsis
- // methods
- public static DigestTrypsin getDigest()
- public static void getEnzymes()
Coverage
| Methods | 100% | 2 / 2 |
| Lines | 100% | 27 / 27 |
Methods
public
- getDigest() — Gets the digest object associated with the enzyme
- getEnzymes()
History
-
2017-10-24T16:05:10+01:00 (commit #b2240f0)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Tweaked PHPMD rules
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2017-03-30T17:42:57+01:00 (commit #5842bc4)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added all PSI-MS specified enzymes
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2017-02-08T15:18:50+00:00 (commit #1dca06f)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
* Fixed crash in AminoAcidMono::getMonoisotopicMassInsensitive * Fixed crash in DigestFactory::getDigest()
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2017-01-13T13:17:36+00:00 (commit #3c2d727)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Fixed warnings generated by XML missing doctype Added DigestRegularExpression as boiler plate code for all regular expression suitable enzyme
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2017-01-11T15:23:51+00:00 (commit #2a88d63)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added Trpysin digestion unit test
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2017-01-11T13:56:23+00:00 (commit #91a55ef)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Improved filtering and digestion documentation
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2017-01-11T13:40:21+00:00 (commit #9d6bc95)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added peptide filtering by length
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2017-01-10T17:59:54+00:00 (commit #b31d27a)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Fixed AbstractDigest extending itself
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2017-01-10T17:51:30+00:00 (commit #b3dacff)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added initial Protein code Added initial Peptide code Added initial digestion code Improved Fasta and MGF tests
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2017-01-09T16:16:46+00:00 (commit #e51fa74)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added Uniprot Fasta parsing
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2016-12-21T22:46:34+00:00 (commit #b22f4ef)
Author: Andrew Collins (detritus@blueyonder.co.uk) / Commiter: Andrew Collins (detritus@blueyonder.co.uk)
Case fix (part 2)
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2016-12-21T22:46:08+00:00 (commit #473c9c5)
Author: Andrew Collins (detritus@blueyonder.co.uk) / Commiter: Andrew Collins (detritus@blueyonder.co.uk)
Autoload path fix Case fix (part 1)
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2016-12-21T15:46:48+00:00 (commit #32f349b)
Author: Andrew Collins (detritus@blueyonder.co.uk) / Commiter: Andrew Collins (detritus@blueyonder.co.uk)
Added initial source files