pgb_liv\php_ms\Utility\Digest\AbstractDigest::setNmeEnabled
Sets whether n-terminal methionine excision should be performed.
When enabled any methionine at the n-terminus of a protein will be removed. Both the excised and non-excised peptide will be returned after digestion. Defaults to true.
Signature
public function setNmeEnabled(bool
$isNmeEnabled )
Parameters
$isNmeEnabled— object
Set true to enable n-terminal methionine excision
Test Coverage
Information
- Coverage: 5/5 Lines (100%)
- Tests: 4
- Passed: 4 (100%)
Tests
- [ PASSED ] — pgb_liv\php_ms\Test\Unit\AbstractDigestTest::testCanValidiateGetSetValidNmeEnabled
- [ PASSED ] — pgb_liv\php_ms\Test\Unit\AbstractDigestTest::testCanValidiateSetInvalidNmeEnabled
- [ PASSED ] — pgb_liv\php_ms\Test\Unit\AbstractDigestTest::testCanValidiatePeptideNmeEnabled
- [ PASSED ] — pgb_liv\php_ms\Test\Unit\AbstractDigestTest::testCanValidiatePeptideNmeDisabled
Violations
Checkstyle
| Line | Column | Severity | Message |
|---|---|---|---|
| 91 | 1 | error | Multi-line function call not indented correctly; expected 12 spaces but found 16 |
| 91 | 91 | error | Closing parenthesis of a multi-line function call must be on a line by itself |