pgb_liv\php_ms\Utility\Digest\AbstractDigest::digest

Digest the protein and produce peptides matching the enzyme rules.

Signature

public function digest(Protein $protein )

Parameters

$protein — pgb_liv\php_ms\Core\Protein


Must contain a protein sequence

Returns

array




Test Coverage

Information

• Coverage: 5/5 Lines (100%)
• Tests: 9
• Passed: 9 (100%)

Tests

• [ PASSED ] — pgb_liv\php_ms\Test\Unit\AbstractDigestTest::testCanValidiatePeptideNmeEnabled
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\AbstractDigestTest::testCanValidiatePeptideNmeDisabled
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\DigestTrypsinTest::testCanValidateEntryK
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\DigestTrypsinTest::testCanValidateEntryR
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\DigestTrypsinTest::testCanValidateEntryKR
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\DigestTrypsinTest::testCanValidateEntryKP
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\DigestTrypsinTest::testCanValidateEntryRP
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\DigestTrypsinTest::testCanValidateEntryMissCleave
• [ PASSED ] — pgb_liv\php_ms\Test\Unit\DigestTrypsinTest::testCanValidateSiteAtEnd