pgb_liv\php_ms\Reader\MzIdentMlReader1r1::getSpectrumIdentificationItem

An identification of a single (poly)peptide, resulting from querying an input spectra, along with the set of confidence values for that identification.

PeptideEvidence elements should be given for all mappings of the corresponding Peptide sequence within protein sequences.

Signature

private function getSpectrumIdentificationItem(SimpleXMLElement $xml )

Parameters

$xml — \SimpleXMLElement


XML to parse

Returns

PrecursorIon




Test Coverage

Information

• Coverage: 0/35 Lines (0%)
• Tests: 0
• Passed: 0 (0%)

Violations

PHPMessDetector

Line	Rule	Message
1029 - 1031	ElseExpression	The method getSpectrumIdentificationItem uses an else expression. Else is never necessary and you can simplify the code to work without else.

Checkstyle

Line	Column	Severity	Message
1030	141	warning	Line exceeds 120 characters; contains 141 characters