pgb_liv\php_ms\Reader\HupoPsi\PsiVerb
Constant class for storing commonly used verbs across HUPO-PSI parsed files
- Author: Andrew Collins
Synopsis
- // constants
- const CV_ACCESSION = 'accession';
- const CV_VALUE = 'value';
- const CV_NAME = 'name';
- const CV_UNITACCESSION = 'unitAccession';
- const NCBI_TAX_ID = 'NcbiTaxId';
- const TAX_NAME = 'TaxName';
- const DB_NAME = 'DbName';
- const DB_VERSION = 'DbVersion';
- const DB_SOURCE = 'DbSource';
- const SEQUENCE_TYPE = 'SequenceType';
- const NUMBER_OF_ENTRIES = 'NumberOfEntries';
Coverage
| Methods | 0% | 0 / 0 |
| Lines | 0% | 0 / 0 |
Constants
| Name | Value |
|---|---|
| CV_ACCESSION | 'accession' |
| CV_VALUE | 'value' |
| CV_NAME | 'name' |
| CV_UNITACCESSION | 'unitAccession' |
| NCBI_TAX_ID | 'NcbiTaxId' |
| TAX_NAME | 'TaxName' |
| DB_NAME | 'DbName' |
| DB_VERSION | 'DbVersion' |
| DB_SOURCE | 'DbSource' |
| SEQUENCE_TYPE | 'SequenceType' |
| NUMBER_OF_ENTRIES | 'NumberOfEntries' |
History
-
2019-04-04T12:35:18+01:00 (commit #2da71d6)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Redundancy tidy
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2019-04-04T12:15:00+01:00 (commit #984f154)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Clean up
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2019-04-02T11:54:45+01:00 (commit #c7d351b)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Code tidy
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2017-10-31T13:28:09+00:00 (commit #3447212)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Fixed incorrect package name for PsiVerb
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2017-10-26T14:43:54+01:00 (commit #c473e55)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Removed constant from traits
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2017-03-31T18:19:53+01:00 (commit #3085645)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Tweaked Trypsin regexp to not split on line terminator Added Peptide support to mass filter Added additional methods to DigestInterface Added initial MS-GF+ code
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2017-03-30T17:42:57+01:00 (commit #5842bc4)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added all PSI-MS specified enzymes
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2017-01-13T13:24:39+00:00 (commit #09d6bb9)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Fixed incorrect constant usage
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2017-01-13T13:17:36+00:00 (commit #3c2d727)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Fixed warnings generated by XML missing doctype Added DigestRegularExpression as boiler plate code for all regular expression suitable enzyme
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2017-01-11T15:23:51+00:00 (commit #2a88d63)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added Trpysin digestion unit test
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2017-01-11T13:56:23+00:00 (commit #91a55ef)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Improved filtering and digestion documentation
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2017-01-11T13:40:21+00:00 (commit #9d6bc95)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added peptide filtering by length
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2017-01-10T17:57:46+00:00 (commit #acca036)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Fixed compile error due to multiple constructors
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2017-01-10T17:51:30+00:00 (commit #b3dacff)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added initial Protein code Added initial Peptide code Added initial digestion code Improved Fasta and MGF tests