pgb_liv\php_ms\Core\Transcript
Class for transcript object.
- Author: Andrew Collins
Synopsis
- // members
- private $type;
- // Inherited methods from DatabaseEntryTrait
- public void setDatabaseEntry()
- public DatabaseEntry getDatabaseEntry()
Hierarchy
Coverage
| Methods | 0% | 0 / 2 |
| Lines | 0% | 0 / 6 |
Members
private
- $type
—
string
Type of this gene (e.g.
Methods
public
Inherited from pgb_liv\php_ms\Core\DatabaseEntryTrait
public
- getDatabaseEntry() — Gets the database entry for this instance
- setDatabaseEntry()
History
-
2019-04-01T14:53:41+01:00 (commit #cc91234)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Fixed IonSort using outdated methods Fixed digest performing NME on single AA sequences Changed handling of database data, allows for a single sequence to map to multiple formats. Should be better suited for PEFF
-
2019-01-29T15:58:13+00:00 (commit #f1ad344)
Author: Andrew Collins (detritus@blueyonder.co.uk) / Commiter: Andrew Collins (detritus@blueyonder.co.uk)
Tidied up mass additives
-
2018-05-23T12:14:08+01:00 (commit #cb13f8c)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Addition of Chemical and Physical constants file. Currently only contains constants used internally. Deprecated original constant sites and updated internal usages.
-
2018-05-22T14:54:11+01:00 (commit #4b5ae80)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Updated Fragment Ion generators to support generating ions at specified charge values
-
2017-10-19T17:26:09+01:00 (commit #8fb3113)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added fragment interface class Added fragment factory to get fragment types by a fragmentation method
-
2017-10-19T15:23:16+01:00 (commit #a2c1bc5)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added support for generating A and X ions
-
2017-07-10T16:56:51+01:00 (commit #e81ad50)
Author: Andrew Collins (detritus@blueyonder.co.uk) / Commiter: Andrew Collins (detritus@blueyonder.co.uk)
Simplified fragmentation mass additive
-
2017-07-10T16:30:42+01:00 (commit #86d6efb)
Author: Andrew Collins (detritus@blueyonder.co.uk) / Commiter: Andrew Collins (detritus@blueyonder.co.uk)
Fixed C ions gaining an extra ion Fixed Z ions gaining extra mass Add fragmentation tests
-
2017-06-30T19:52:10+01:00 (commit #3c20d79)
Author: Andrew Collins (detritus@blueyonder.co.uk) / Commiter: Andrew Collins (detritus@blueyonder.co.uk)
Added additional testing Moved sequence mass calculation to trait from peptide. Allows protein mass to be calculated.
-
2017-06-30T12:56:00+01:00 (commit #60f1a8b)
Author: Andrew Collins (detritus@blueyonder.co.uk) / Commiter: Andrew Collins (detritus@blueyonder.co.uk)
Fixed protein name not returning a value Allowed peptide sequence to be set in constructor Moved fragmentation code to separate classes
-
2017-06-30T11:36:28+01:00 (commit #f8926bd)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Fragmentation placeholder code