pgb_liv\php_ms\Core\ProteinEntry\ChromosomeProteinEntry

A protein entity object for adding references to a protein object.

Allows items such as peptides to link to specific sections of a protein string

Synopsis

class ChromosomeProteinEntry extends ProteinEntry {
}

Hierarchy

Extends

Coverage

Methods 100% 8 / 8
Lines 100% 28 / 28

Violations

Checkstyle

Line Column Severity Message
81 1 error Multi-line function call not indented correctly; expected 16 spaces but found 20
81 106 error Closing parenthesis of a multi-line function call must be on a line by itself
92 1 error Multi-line function call not indented correctly; expected 12 spaces but found 16
92 93 error Closing parenthesis of a multi-line function call must be on a line by itself
102 1 error Multi-line function call not indented correctly; expected 12 spaces but found 16
102 90 error Closing parenthesis of a multi-line function call must be on a line by itself
110 36 error Whitespace found at end of line
113 1 error Multi-line function call not indented correctly; expected 16 spaces but found 20
113 103 error Closing parenthesis of a multi-line function call must be on a line by itself

Members

private

  • $blockCount — int
    Chromosome block count
  • $blockSizes — array
    Chromosome block sizes
  • $end — int
    Chromosome end position
  • $starts — array
    Chromosome start positions

Methods

public

Inherited from pgb_liv\php_ms\Core\ProteinEntry\ProteinEntry

public

  • getEnd() — Gets the end position of the parent object inside the protein
  • getProtein() — Gets the encapsulated protein
  • getStart() — Gets the start position of the parent object inside the protein
  • setEnd() — Sets the end position of the parent object inside the protein
  • setStart() — Sets the start position of the parent object inside the protein

History