pgb_liv\php_ms\Core\Organism
Class for organism object.
- Author: Andrew Collins
Synopsis
class Organism
{
- // members
- private $name;
- private $identifier;
- private static $instances;
- // methods
- public void setName()
- public string getName()
- public void setIdentifier()
- public void getIdentifier()
- public static Organism getInstance()
- public static bool hasInstance()
Coverage
| Methods | 0% | 0 / 6 |
| Lines | 0% | 0 / 25 |
Members
private
- $identifier
—
string
The unique identifier of the source organism, assigned by the NCBI. - $instances — array
- $name
—
string
The scientific name of the organism.
Methods
public
- getIdentifier()
- getInstance()
- getName() — Gets the scientific name of the organism.
- hasInstance()
- setIdentifier() — Sets the identifier (NCBI) of the organism. If identifier is known at object creation, getInstance() should be used
- setName() — Sets the scientific name of the organism.
History
-
2019-04-01T14:53:41+01:00 (commit #cc91234)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Fixed IonSort using outdated methods Fixed digest performing NME on single AA sequences Changed handling of database data, allows for a single sequence to map to multiple formats. Should be better suited for PEFF