pgb_liv\php_ms\Core\Gene
Class for gene object.
- Author: Andrew Collins
Synopsis
class Gene
{
- // members
- private $symbol;
- private $name;
- private $type;
- private static $instances;
- // methods
- public void __construct()
- public string getSymbol()
- public void setName()
- public string getName()
- public void setType()
- public string getType()
- public static Gene getInstance()
- // Inherited methods from DatabaseEntryTrait
- public void setDatabaseEntry()
- public DatabaseEntry getDatabaseEntry()
Hierarchy
Coverage
| Methods | 0% | 0 / 7 |
| Lines | 0% | 0 / 13 |
Members
private
- $instances — array
- $name
—
string
Name of this gene - $symbol
—
string
Symbol of this gene - $type
—
string
Type of this gene (e.g.
Methods
public
- __construct() — Sets the gene symbol
- getInstance()
- getName() — Gets the name for this gene
- getSymbol() — Gets the symbol for this gene
- getType() — Gets the bio type for this gene
- setName() — Sets the gene name
- setType() — Sets the gene bio type (E.g.
Inherited from pgb_liv\php_ms\Core\DatabaseEntryTrait
public
- getDatabaseEntry() — Gets the database entry for this instance
- setDatabaseEntry()
History
-
2019-06-14T10:51:32+01:00 (commit #c0ce3f2)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added support for Ensemble Genes
-
2019-04-01T14:53:41+01:00 (commit #cc91234)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Fixed IonSort using outdated methods Fixed digest performing NME on single AA sequences Changed handling of database data, allows for a single sequence to map to multiple formats. Should be better suited for PEFF
-
2018-01-03T14:41:00+00:00 (commit #3adbebd)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added support for null lengths on FilterLength
-
2017-10-12T11:54:29+01:00 (commit #c1a6d58)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added support for multiple proteins on peptide identifications Added support for Chromosome objects on proteins Added support for writing proBedFiles