pgb_liv\php_ms\Core\Entry\ProteinEntry

A protein entity object for adding references to a protein object.

Allows items such as peptides to link to specific sections of a protein string

Synopsis

class ProteinEntry {
}

Coverage

Methods 100% 6 / 6
Lines 100% 15 / 15

Violations

Checkstyle

Line Column Severity Message
82 1 error Multi-line function call not indented correctly; expected 12 spaces but found 16
82 93 error Closing parenthesis of a multi-line function call must be on a line by itself
108 1 error Multi-line function call not indented correctly; expected 12 spaces but found 16
108 93 error Closing parenthesis of a multi-line function call must be on a line by itself

Members

private

  • $end — int
    The end position of object to sequence
  • $protein — pgb_liv\php_ms\Core\Protein
    The protein object to link
  • $start — int
    The start position of object to sequence

Methods

public

  • __construct() — Creates a new ProteinEntity object with the specified protein
  • getEnd() — Gets the end position of the parent object inside the protein
  • getProtein() — Gets the encapsulated protein
  • getStart() — Gets the start position of the parent object inside the protein
  • setEnd() — Sets the end position of the parent object inside the protein
  • setStart() — Sets the start position of the parent object inside the protein

History