pgb_liv\php_ms\Core\Database\UniProtTrDatabase
Class for UniProtKB/TrEMBL (tr) database
- Author: Andrew Collins
Synopsis
- // constants
- const PREFIX = 'tr';
- // methods
- protected void __construct()
- // Inherited methods from AbstractDatabase
- protected void __construct()
- public void getPrefix()
- public void getName()
- protected void setSource()
- public void getSource()
- public static DatabaseInterface getInstance()
Hierarchy
Coverage
| Methods | 0% | 0 / 1 |
| Lines | 0% | 0 / 4 |
Constants
| Name | Value |
|---|---|
| PREFIX | 'tr' |
Methods
Inherited from pgb_liv\php_ms\Core\Database\AbstractDatabase
protected
public
- getInstance() — Gets the singleton intance for this prefix
- getName() — {@inheritdoc}
- getPrefix() — {@inheritdoc}
- getSource() — {@inheritdoc}
History
-
2019-04-04T11:42:00+01:00 (commit #26a21ad)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Refined database support model Updated PEFF support to be compliant
-
2019-04-01T14:53:41+01:00 (commit #cc91234)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Fixed IonSort using outdated methods Fixed digest performing NME on single AA sequences Changed handling of database data, allows for a single sequence to map to multiple formats. Should be better suited for PEFF
-
2019-01-29T15:58:13+00:00 (commit #f1ad344)
Author: Andrew Collins (detritus@blueyonder.co.uk) / Commiter: Andrew Collins (detritus@blueyonder.co.uk)
Tidied up mass additives
-
2018-05-23T12:14:08+01:00 (commit #cb13f8c)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Addition of Chemical and Physical constants file. Currently only contains constants used internally. Deprecated original constant sites and updated internal usages.
-
2018-05-22T14:54:11+01:00 (commit #4b5ae80)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Updated Fragment Ion generators to support generating ions at specified charge values
-
2017-10-19T17:26:09+01:00 (commit #8fb3113)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added fragment interface class Added fragment factory to get fragment types by a fragmentation method
-
2017-07-10T16:56:51+01:00 (commit #e81ad50)
Author: Andrew Collins (detritus@blueyonder.co.uk) / Commiter: Andrew Collins (detritus@blueyonder.co.uk)
Simplified fragmentation mass additive
-
2017-06-30T19:52:10+01:00 (commit #3c20d79)
Author: Andrew Collins (detritus@blueyonder.co.uk) / Commiter: Andrew Collins (detritus@blueyonder.co.uk)
Added additional testing Moved sequence mass calculation to trait from peptide. Allows protein mass to be calculated.
-
2017-06-30T12:56:00+01:00 (commit #60f1a8b)
Author: Andrew Collins (detritus@blueyonder.co.uk) / Commiter: Andrew Collins (detritus@blueyonder.co.uk)
Fixed protein name not returning a value Allowed peptide sequence to be set in constructor Moved fragmentation code to separate classes
-
2017-06-30T11:36:28+01:00 (commit #f8926bd)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Fragmentation placeholder code