pgb_liv\php_ms\Core\Chromosome
Class for chromosome identification object, provides storage for assigning a name, strand and version.
- Author: Andrew Collins
Synopsis
class Chromosome
{
- // members
- private $name;
- private $strand;
- private $genomeReferenceVersion;
- // methods
- public void setName()
- public string getName()
- public void setStrand()
- public string getStrand()
- public void setGenomeReferenceVersion()
- public string getGenomeReferenceVersion()
Coverage
| Methods | 100% | 6 / 6 |
| Lines | 100% | 9 / 9 |
Members
private
- $genomeReferenceVersion
—
string
The reference genome and versioning string as used for mapping. - $name
—
string
Name of this chromosome - $strand
—
string
Strand of this chomosome
Methods
public
- getGenomeReferenceVersion() — Gets the reference genome and versioning string as used for mapping.
- getName() — Gets the name for this chromosome
- getStrand() — Gets the chromosome strand
- setGenomeReferenceVersion() — Sets the reference genome and versioning string as used for mapping.
- setName() — Sets the chromosome name
- setStrand() — Sets the chromosome strand
History
-
2018-01-03T14:41:00+00:00 (commit #3adbebd)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added support for null lengths on FilterLength
-
2017-10-12T11:54:29+01:00 (commit #c1a6d58)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added support for multiple proteins on peptide identifications Added support for Chromosome objects on proteins Added support for writing proBedFiles