pgb_liv\php_ms\Constant\ChemicalConstants
Static class containing chemical constant values in daltons.
- Author: Andrew Collins
Synopsis
- // constants
- const HYDROGEN_MASS = 1.00782503223;
- const CARBON_MASS = 12.0;
- const NITROGEN_MASS = 14.00307400443;
- const OXYGEN_MASS = 15.99491461957;
- const PHOSPHORUS_MASS = 30.97376199842;
- const SELENIUM_MASS = 79.9165218;
Coverage
| Methods | 0% | 0 / 0 |
| Lines | 0% | 0 / 0 |
Constants
| Name | Value |
|---|---|
| HYDROGEN_MASS | 1.00782503223 |
| CARBON_MASS | 12.0 |
| NITROGEN_MASS | 14.00307400443 |
| OXYGEN_MASS | 15.99491461957 |
| PHOSPHORUS_MASS | 30.97376199842 |
| SELENIUM_MASS | 79.9165218 |
History
-
2019-04-02T11:54:45+01:00 (commit #c7d351b)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Code tidy
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2019-02-13T14:04:14+00:00 (commit #96b977b)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added Phos
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2019-02-12T16:34:09+00:00 (commit #44eb3ad)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Tweaked masses
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2018-08-15T11:31:38+01:00 (commit #32b5561)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Improved detection of software package name in MzIdentmlReader
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2018-05-23T12:14:08+01:00 (commit #cb13f8c)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Addition of Chemical and Physical constants file. Currently only contains constants used internally. Deprecated original constant sites and updated internal usages.
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2018-05-22T14:54:11+01:00 (commit #4b5ae80)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Updated Fragment Ion generators to support generating ions at specified charge values
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2017-10-19T17:26:09+01:00 (commit #8fb3113)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added fragment interface class Added fragment factory to get fragment types by a fragmentation method
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2017-10-19T15:23:16+01:00 (commit #a2c1bc5)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Added support for generating A and X ions
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2017-07-10T16:56:51+01:00 (commit #e81ad50)
Author: Andrew Collins (detritus@blueyonder.co.uk) / Commiter: Andrew Collins (detritus@blueyonder.co.uk)
Simplified fragmentation mass additive
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2017-07-10T16:30:42+01:00 (commit #86d6efb)
Author: Andrew Collins (detritus@blueyonder.co.uk) / Commiter: Andrew Collins (detritus@blueyonder.co.uk)
Fixed C ions gaining an extra ion Fixed Z ions gaining extra mass Add fragmentation tests
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2017-06-30T19:52:10+01:00 (commit #3c20d79)
Author: Andrew Collins (detritus@blueyonder.co.uk) / Commiter: Andrew Collins (detritus@blueyonder.co.uk)
Added additional testing Moved sequence mass calculation to trait from peptide. Allows protein mass to be calculated.
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2017-06-30T12:56:00+01:00 (commit #60f1a8b)
Author: Andrew Collins (detritus@blueyonder.co.uk) / Commiter: Andrew Collins (detritus@blueyonder.co.uk)
Fixed protein name not returning a value Allowed peptide sequence to be set in constructor Moved fragmentation code to separate classes
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2017-06-30T11:36:28+01:00 (commit #f8926bd)
Author: detritus (detritus@blueyonder.co.uk) / Commiter: detritus (detritus@blueyonder.co.uk)
Fragmentation placeholder code