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| <?php | |
| /** | |
| * Copyright 2019 University of Liverpool | |
| * | |
| * Licensed under the Apache License, Version 2.0 (the "License"); | |
| * you may not use this file except in compliance with the License. | |
| * You may obtain a copy of the License at | |
| * | |
| * http://www.apache.org/licenses/LICENSE-2.0 | |
| * | |
| * Unless required by applicable law or agreed to in writing, software | |
| * distributed under the License is distributed on an "AS IS" BASIS, | |
| * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | |
| * See the License for the specific language governing permissions and | |
| * limitations under the License. | |
| */ | |
| namespace pgb_liv\php_ms\Reader\FastaEntry; | |
| use pgb_liv\php_ms\Core\Protein; | |
| /** | |
| * Interface to fasta file formats | |
| * | |
| * @author Andrew Collins | |
| */ | |
| interface FastaInterface | |
| { | |
| /** | |
| * Gets a protein object from the FASTA fields | |
| * | |
| * @param string $identifier | |
| * The identifier string | |
| * @param string $description | |
| * The description string without identifier | |
| * @return Protein | |
| */ | |
| public function getProtein($identifier, $description); | |
| public static function parseIdentifier($identifier); | |
| } |